Thanks Orbital Shark, I forgot about the organize button. Your a genius. LOL at myself. That works, and as for the desktop (for anyone who was wondering where that was haha) you need to explore to it, and there is no address bar on the desktop, duh.lol
I have also narrowed down the glitch: It only does it on 2 types of files (I tried any file extension I could think of to make sure) EXE, and Shortcuts.