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#11
Here is the download location for the most recent free version of Macrium:
Macrium Reflect FREE Edition - Information and download
If you have more than one drive connected during a Win 7 install, it can do some odd things. The solution is to disconnect or disable all drives other than the one onto which you intend to install Win 7.
One of the odd things Win 7 can do is install System Reserved onto Disc 0 whenever possible---even if C is on Disk 1. That's likely what happened in your case.
If you had the hard disk containing C attached as Disc 0 rather than Disc 1, then System Reserved and C would likely have ended up on the same disk--Disc 0.
If you ever intend to do a fresh install, you can swap the 2 drive cables of those drives at the motherboard level. Connect the hard drive containing C to the port that Disc 0 is now connected. Leave the other drive unconnected during the install. After the install is complete, connect the drive containing your E and F partitions to the other port---the one to which the C drive is now connected.
Wait for WHS. I think you can likely fix your current issue by following his instructions from post 2, but I'd let him confirm that.