Could you post a screenshot of this location? I'm not sure what you mean by having the "Users folder" library. It sounds like you are talking about the C:\Users\(user-name)
If you do mean libraries, then as a test, create a new administrator account, and delete the library folders that you did not want to see if they stay gone in that user account. This will help determine if it's a issue in just your current user account, or for all users.