Windows 7 - Group Policy- Missing Libraries and Startup

I am working on building my Group Policies for Windows 7 Pro for my office. We do not have an Active Directory environment and use a non-Microsoft product for the central policy management. While I'm building policies I am trying to mimic my settings from my XP policy but do see where Windows 7 has its own settings.

Right now I am running into 2 issues, the first is that the Startup folder is not appearing under my Programs Menu when I try to access it from under policy, but when I remove policy it appears. The items in the folder do execute as expected, but I cannot access them to add/remove what I need to per workstation.

My second issue is that when I do a File->Save As and the window appears, I can see the Favorites and Libraries locations, but nothing is appearing under them. Favorites usually has Desktop and Recent Places, and Libraries usually has Documents, Music, etc... All I get are the Favorites and Libraries top level containers with nothing inside of them while I am in policy.

Does anyone know what settings I need to change to fix these two issues? Thanks!