Like I said, I am not really too worried about IE9 it's just that some GUI's tend to run slower than they used to and something is interfering with them. Here is a log from Superantispyware:
SUPERAntiSpyware Scan Log
SUPERAntiSpyware | Remove Malware | Remove Spyware - AntiMalware, AntiSpyware, AntiAdware!
Generated 10/14/2012 at 06:31 PM
Application Version : 5.6.1010
Core Rules Database Version : 9402
Trace Rules Database Version: 7214
Scan type : Complete Scan
Total Scan Time : 00:09:29
Operating System Information
Windows 7 Ultimate 64-bit, Service Pack 1 (Build 6.01.7601)
UAC Off - Administrator
Memory items scanned : 582
Memory threats detected : 0
Registry items scanned : 74309
Registry threats detected : 0
File items scanned : 37410
File threats detected : 49
Adware.Tracking Cookie
C:\Users\Robert\AppData\Roaming\Microsoft\Windows\Cookies\4TPYSQDF.txt [ /doubleclick.net ]
C:\Users\Robert\AppData\Roaming\Microsoft\Windows\Cookies\GYRQUXRZ.txt [ /legolas-media.com ]
C:\Users\Robert\AppData\Roaming\Microsoft\Windows\Cookies\LFFBPI9K.txt [ /banners.spiceworks.com ]
C:\Users\Robert\AppData\Roaming\Microsoft\Windows\Cookies\V5JN26OX.txt [ /kontera.com ]
C:\Users\Robert\AppData\Roaming\Microsoft\Windows\Cookies\BV3ZUIAG.txt [ /stat.onestat.com ]
C:\USERS\ROBERT\Cookies\4TPYSQDF.txt [ Cookie:robert@doubleclick.net/ ]
C:\USERS\ROBERT\Cookies\V5JN26OX.txt [ Cookie:robert@kontera.com/ ]
C:\USERS\ROBERT\Cookies\BV3ZUIAG.txt [ Cookie:robert@stat.onestat.com/ ]
.doubleclick.net [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.apmebf.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.mediaplex.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.mediaplex.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.casalemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.burstnet.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.adbrite.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
ad.yieldmanager.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.invitemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.invitemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.at.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tacoda.net [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.invitemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.ar.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.atwola.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.advertising.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.advertising.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.tribalfusion.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.invitemedia.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
.adbrite.com [ C:\USERS\ROBERT\APPDATA\LOCAL\GOOGLE\CHROME\USER DATA\DEFAULT\COOKIES ]
These are false positives as they belong to MS Flight Simulator and I have not selected for removal:
Trojan.Agent/Gen-MSFake
C:\PROGRAM FILES (X86)\MICROSOFT GAMES\MICROSOFT FLIGHT SIMULATOR X\ADDON SCENERY\CYYJ (2011)\UPDATE CHECKER\CHECKFORUPDATE_CYYJ.EXE
Heur.Agent/Gen-WhiteBox
C:\PROGRAM FILES (X86)\MICROSOFT GAMES\MICROSOFT FLIGHT SIMULATOR X\ADDON SCENERY\FLYTAMPA-ATHENS\FLYTAMPA_ATHENS_FSX_UNINSTALL.EXE
C:\PROGRAMDATA\MICROSOFT\WINDOWS\START MENU\PROGRAMS\FLYTAMPA\ATHENS\UNINSTALL FLYTAMPA-ATHENS (FSX).LNK
Trojan.Agent/Gen-HackPatch
C:\USERS\ROBERT\DOWNLOADS\AEROSOFT FBW MOD\FBWCODEBETAV1.0ALPHA1G\AEROSOFT.AIRBUS.X.FBW.CODE.PATCHER-UNINSTALLER.EXE
ZIP ARCHIVE( C:\USERS\ROBERT\DOWNLOADS\AEROSOFT FBW MOD\FBWCODEBETAV1.0ALPHA1G.ZIP )/AEROSOFT.AIRBUS.X.FBW.CODE.PATCHER-UNINSTALLER.EXE
C:\USERS\ROBERT\DOWNLOADS\AEROSOFT FBW MOD\FBWCODEBETAV1.0ALPHA1G.ZIP