I have experience with this card. I can tell you that installing
drivers for it can not possibly affect your boot system if you changed nothing in your BIOS. The
drivers get placed in Windows\System32\
Drivers. So, let's help you start over with it.
With the pc down and open, remove the 3 sata drives attached & remove the card.
What were you booting with before? The mobo raid? Is that where your Windows 7 is? What was the boot order in your BIOS before you installed the Silicon Image card?
If you haven't changed anything in there, removal of the 3124 should allow you to boot.
Trying to run six hard drives on top of the stock hardware will require one hell of a power supply. That HX520 in real life is not giving you the 520 watts. Probably 485. My guess is you don't have enough power to run six hd's and a Sapphire graphics card.
And, it feels as if you'd like to set up two raids? Why?
Please answer those few questions and THINK VERY STRONGLY ABOUT DOUBLING YOUR WATTAGE.