Unfortunately they didn't release the hotfix for 64bit systems. Thanks for pointing me in the right direction tho. It had something to do with the default SATA driver.
I installed the intel matrix storage manager driver last night and when I woke the computer up this morning the extra drive was still there so it looks like it fixed the problem.
The link below is what I installed if anyone else is having the same problem.
Intel(R) Matrix Storage Manager