I don't believe you can clone or reimage Windows 7 from RAID1 to single HD. I have asked the experts on this here and they say no.
You can of course try it using cloning, imaging or Moving with free Partition Wizard bootable CD which allow you to choose a drive letter for target. But don't get your hopes up. If it will reimage/Move, you may need to run
Startup Repair - Run 3 Separate Times to repair the MBR making sure partition is marked Active first.
Since you'll likely need to clean reinstall (a very good thing) to the Raptor, why not also reinstall the programs properly to the OS partition. They really should have never been separated out into their own partition since they are integrated into the registry during install.