After contacting (without any good) Acer support I finally managed to solve the problem, using RescaTux (here if anyone would need it in the future
Rescatux - Super Grub Disk) plus TestDisk (sudo apt-get update && sudo apt-get install testdisk).
But this problem was really awkward. I had a notebook with Windows Vista which once had dual boot with Ubuntu, when I did factory restore on it, it resized the partitions and rewrote the MBR) but with Windows 7 was different. It remove two logical partition, kept the extended and swap and did not rewrote the MBR.
Anyway, the problem was solved. So thank you everybody for your support.