If System Reserved was marked Active to run the repairs, were all other HD's unplugged? You can also try marking C Active to run the Repairs in case SysReserved has been corrupted.
Or delete and recreate System Reserved, mark Active then run the Repairs to rewrite the boot files completely.
You may want to wait until a reinstall to have F8 WinRe. If you proceed I'd back up a Windows 7 System image so you have a path back.