@speedgamer01 Looks like you're the only person on Earth who knows what 'Tools|Apply Media Information Changes' does, even Microsoft doesn't or can't be bothered to document this cryptically named feature! ^-^
I think it's also run every time you launch WMP, but I ran it anyway (took about 40 minutes) after making a backup, and it did not change anything on the playlists. They are not 'media information' per se, so it's not surprising.
As for your other proposal, this is precisely what I want to avoid, see the thread's title. I really hate that the WMP library datase is not granular. It is a shame that users need to delete the whole database they spent dozens of hours to edit, just for 2 wrong playlist entries that are a result of a WMP bug in the first place...