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#11
The only variable here is the switch from the dual core e6600 to the quad core Q9400. I've been running osx along with various versions of windows inclulding xp, vista, and win7 7000 x64, 7057 x64, and 7068 x64. They are on separate hard drives, and osx loads using pc-efi v9 which is only installed on the osx drive. No changes or hacks are made to the bios. I don't use any 3rd party boot managers, i simply choose which os to boot by selecting the primary drive from the BIOS boot selection screen. I can and have removed the os x drive from the system and it is then exactly the same as any other pc.
I only mention the fact that i have os x installed because because it is also a 64-bit OS and is running as usual after switching processors, which would seem to rule out an actual problem with one of the CPU cores. (possibly leading to the OS thinking there was some sort of multiprocessor mismatch going on...)
edit: i did reset my bios to defaults when i upgraded the processor, so it's possible there is a setting that i have adjusted differently than before when everything was working...