New
#11
Yes David I know what you mean it is a vast area that is a mystery to me too one needs to be a programmer to know what all that gear is see this https://support.microsoft.com/en-us/kb/928228
Now I was rather hoping the chkdsk with the /f and /r switches would correct any corruption and that is what it seems like to me. Try it if you haven't already and if there is still a problem or two then we might need to ask for help.
The other alternative is to save your data and then reinstall or you could try this Startup Repair I know it says start up repair for non booting machines but it might just fix whatever it missing on yours.