Both SFC and CheckSUR agree that the only problems that need to be addressed are these...
Code:
2015-07-07 16:55:52, Info CSI 00000304 [SR] Repairing 1 components
2015-07-07 16:55:52, Info CSI 00000305 [SR] Beginning Verify and Repair transaction
2015-07-07 16:55:52, Info CSI 00000306 [SR] Cannot repair member file [l:22{11}]"msvcr90.dll" of Microsoft.VC90.CRT, Version = 9.0.30729.6161, pA = PROCESSOR_ARCHITECTURE_AMD64 (9), Culture neutral, VersionScope neutral, PublicKeyToken = {l:8 b:1fc8b3b9a1e18e3b}, Type = [l:10{5}]"win32", TypeName neutral, PublicKey neutral in the store, file is missing
2015-07-07 16:55:52, Info CSI 00000307 [SR] Cannot repair member file [l:22{11}]"msvcp90.dll" of Microsoft.VC90.CRT, Version = 9.0.30729.6161, pA = PROCESSOR_ARCHITECTURE_AMD64 (9), Culture neutral, VersionScope neutral, PublicKeyToken = {l:8 b:1fc8b3b9a1e18e3b}, Type = [l:10{5}]"win32", TypeName neutral, PublicKey neutral in the store, file is missing
2015-07-07 16:55:52, Info CSI 00000308 [SR] Cannot repair member file [l:22{11}]"msvcm90.dll" of Microsoft.VC90.CRT, Version = 9.0.30729.6161, pA = PROCESSOR_ARCHITECTURE_AMD64 (9), Culture neutral, VersionScope neutral, PublicKeyToken = {l:8 b:1fc8b3b9a1e18e3b}, Type = [l:10{5}]"win32", TypeName neutral, PublicKey neutral in the store, file is missing
2015-07-07 16:55:52, Info CSI 0000030a [SR] Repair complete
(The other errors that you see in CheckSUR are normal and can be ignored, usually)
I'll post a fix tomorrow - it's past my bedtime now!