Booting OS from encrypted flash drive

Botard

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Good day,
Is there a usb tool can encrypt part of your flash drive but able to boot the OS you installed from the other part? I have a flash drive planning to install a bootable OS as primary and the secondary usable storage remain should be encrypted. So, I have now a flash drive with bootable OS and an encrypted portable app for windows. I really like the bitlocker encryption, you just need to type the password then the drive itself will open, which is easier than veracrypt, but the problem in bitlocker is the bootable OS you installed cannot boot?
 

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MSI
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Windows 7 guest, Debian host
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AMD FX-6100
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880GMS-E41(FX)(MS-7641)
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DDR3/16384 MBytes/2000.6MHz
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You could probably create two partitions on your flash drive, one for the OS and the other for your data. Then encrypt the data partition, but not the OS partition.

Just about all of the tools I have seen for setting up a bootable flash drive allow you to set up "persistent storage" on the drive, so that you can save any changes you make when you are logged into the OS on the flash drive. If you set the flash drive up with persistent storage, you may be able to put encryption on the persistent storage part of the flash drive.
 

My Computer

Computer type
PC/Desktop
Computer Manufacturer/Model Number
Dell
OS
Linux Mint 18.2 xfce 64-bit (VMWare host) / Windows 8.1 Pro 32-bit (VMWare guest)
CPU
Haswell
Memory
4 GB
Monitor(s) Displays
Acer 23"
Screen Resolution
1920 x 1080
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Two hard drives, 1TB each: One for Linux, one for my data.
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IBM Model M
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Sophos (Linux), Trend Micro (Windows)
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Firefox, Opera
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I use Samba to share my data drive with the other computers at my house and with my guest session in VMWare Workstation Player.
I created a partition using Knoppix with an option of overlay protection of less than 4G. The reason I saved files and apps for Windows from the remaining partition. I think this set up is ideal for me. I can use it as my personal OS to any computer or just use the encrypted portable apps at public computer when I travel.

But today, there's another problem with Knoppix in my case... I noticed when I started saving files the OS became unresponsive or it freezes momentarily. Maybe I should used its cd which is fewer apps reside on it to fix this lag.

Tails is awesome there's no lagging in it, too bad is designed for something. I should probably try the other live OS, maybe Debian then get another USB for portable apps, if I can't create a partition?
 

My Computer

Computer type
PC/Desktop
Computer Manufacturer/Model Number
MSI
OS
Windows 7 guest, Debian host
CPU
AMD FX-6100
Motherboard
880GMS-E41(FX)(MS-7641)
Memory
DDR3/16384 MBytes/2000.6MHz
Graphics Card(s)
AMD Radeon HD 5500 Series
Sound Card
Built-in
Monitor(s) Displays
Samsung SyncMaster S23B300
Screen Resolution
1920x1080
Hard Drives
ST1000DM003-9YN162 ATA Device
WDC WD5000AAKX-00ERMAQ ATA Device
PSU
500W NAXN
Case
APOLLO
Cooling
XY
Keyboard
Logitech
Mouse
Samsung
Internet Speed
.79Mbps/1.71Mbps
Antivirus
Microsoft Security Essentials
Browser
Google Chrome/FireFox/Internet Explorer
Other Info
3in1 creative speaker
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