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Malwarebytes : Free anti-malware, anti-virus and spyware removal download can be run in Windows to find trojans.
If you do not want to start Windows and keep that Trojan running, there are bootable virus CDs. Free Bootable AntiVirus Rescue CDs Download List
I suggest either bootable f-secure (although it is a little tough to setup the latest definitions) or bootable Bitdefender (this can get the latest definitions online and has a nice interface).
F-Secure Rescue CD
BitDefender Rescue CD
There is also the simplest method via a USB flash drive Microsoft Standalone System Sweeper Beta | Microsoft Connect
Last edited by writhziden; 06 Feb 2012 at 16:55. Reason: Microsoft Standalone System Sweeper added. Rescue CD links added.