I'm scanning at the moment. This will probably take very long. I've copied more of the log. I think its just 4 files that cannot be fixed if I'm right.
2014-07-02 18:11:17, Info CSI 000001e8 [SR] Repairing 4 components
2014-07-02 18:11:17, Info CSI 000001e9 [SR] Beginning Verify and Repair transaction
2014-07-02 18:11:17, Info CSI 000001ea Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-audio-audiocore_31bf3856ad364e35_6.1.7601.17514_none_78a72e1242e1d8e5\audiodg.exe do not match actual file [l:22{11}]"audiodg.exe" :
Found: {l:32 b:TNlGNrVawp4xnkUisIcdg6pLNEFKfVHv2+AcsdmTZzk=} Expected: {l:32 b:dd41VECcQso7b8FQO8uMr/hdXXcD9+aMOKaaqO8/2oE=}
2014-07-02 18:11:17, Info CSI 000001eb [SR] Cannot repair member file [l:22{11}]"audiodg.exe" of Microsoft-Windows-Audio-AudioCore, Version = 6.1.7601.17514, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:17, Info CSI 000001ec Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-msls31_31bf3856ad364e35_11.2.9600.16428_none_52384b40ff247e5b\msls31.dll do not match actual file [l:20{10}]"msls31.dll" :
Found: {l:32 b:j1SrPsS+eckrqd2pDfO5FXIslLCTiN3n0prkuzf0ttU=} Expected: {l:32 b:5uRFKC0Xzq/qtmpaHgEk3VDyQ4IFvOVknbmYva7QbLc=}
2014-07-02 18:11:17, Info CSI 000001ed [SR] Cannot repair member file [l:20{10}]"msls31.dll" of Microsoft-Windows-MSLS31, Version = 11.2.9600.16428, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:17, Info CSI 000001ee Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-p..ting-wsdportmonitor_31bf3856ad364e35_6.1.7600.16385_none_16a99a5140ecd6c8\WSDMon.dll do not match actual file [l:20{10}]"WSDMon.dll" :
Found: {l:32 b:ly8G+IKWb41NuSH3M9dm7RUEm4FITsZG/X0as34YW4E=} Expected: {l:32 b

G9He1FD/OYH/bCIrkcccDfiusAdjOjFe1zxvlfnjUY=}
2014-07-02 18:11:17, Info CSI 000001ef [SR] Cannot repair member file [l:20{10}]"WSDMon.dll" of Microsoft-Windows-Printing-WSDPortMonitor, Version = 6.1.7600.16385, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:17, Info CSI 000001f0 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-shell-sounds_31bf3856ad364e35_6.1.7600.16385_none_16e8d25616dd2c98\Windows Logon Sound.wav do not match actual file [l:46{23}]"Windows Logon Sound.wav" :
Found: {l:32 b:x1ThX+ePVKlLLGbyvUHGMvzgXRJp7NXjIwH1gNN7oU8=} Expected: {l:32 b

ZkIutJwkJ/AY+TPJunaNc9cNrwwdP5vyaUOvHd3In4=}
2014-07-02 18:11:17, Info CSI 000001f1 [SR] Cannot repair member file [l:46{23}]"Windows Logon Sound.wav" of Microsoft-Windows-Shell-Sounds, Version = 6.1.7600.16385, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:18, Info CSI 000001f2 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-shell-sounds_31bf3856ad364e35_6.1.7600.16385_none_16e8d25616dd2c98\Windows Logon Sound.wav do not match actual file [l:46{23}]"Windows Logon Sound.wav" :
Found: {l:32 b:x1ThX+ePVKlLLGbyvUHGMvzgXRJp7NXjIwH1gNN7oU8=} Expected: {l:32 b

ZkIutJwkJ/AY+TPJunaNc9cNrwwdP5vyaUOvHd3In4=}
2014-07-02 18:11:18, Info CSI 000001f3 [SR] Cannot repair member file [l:46{23}]"Windows Logon Sound.wav" of Microsoft-Windows-Shell-Sounds, Version = 6.1.7600.16385, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:18, Info CSI 000001f4 [SR] This component was referenced by [l:198{99}]"Microsoft-Windows-Foundation-Package~31bf3856ad364e35~x86~~6.1.7601.17514.WindowsFoundationDelivery"
2014-07-02 18:11:18, Info CSI 000001f5 Hashes for file member \??\C:\Windows\Media\Windows Logon Sound.wav do not match actual file [l:46{23}]"Windows Logon Sound.wav" :
Found: {l:32 b:x1ThX+ePVKlLLGbyvUHGMvzgXRJp7NXjIwH1gNN7oU8=} Expected: {l:32 b

ZkIutJwkJ/AY+TPJunaNc9cNrwwdP5vyaUOvHd3In4=}
2014-07-02 18:11:18, Info CSI 000001f6 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-shell-sounds_31bf3856ad364e35_6.1.7600.16385_none_16e8d25616dd2c98\Windows Logon Sound.wav do not match actual file [l:46{23}]"Windows Logon Sound.wav" :
Found: {l:32 b:x1ThX+ePVKlLLGbyvUHGMvzgXRJp7NXjIwH1gNN7oU8=} Expected: {l:32 b

ZkIutJwkJ/AY+TPJunaNc9cNrwwdP5vyaUOvHd3In4=}
2014-07-02 18:11:18, Info CSI 000001f7 [SR] Could not reproject corrupted file [ml:520{260},l:40{20}]"\??\C:\Windows\Media"\[l:46{23}]"Windows Logon Sound.wav"; source file in store is also corrupted
2014-07-02 18:11:18, Info CSI 000001f8 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-p..ting-wsdportmonitor_31bf3856ad364e35_6.1.7600.16385_none_16a99a5140ecd6c8\WSDMon.dll do not match actual file [l:20{10}]"WSDMon.dll" :
Found: {l:32 b:ly8G+IKWb41NuSH3M9dm7RUEm4FITsZG/X0as34YW4E=} Expected: {l:32 b

G9He1FD/OYH/bCIrkcccDfiusAdjOjFe1zxvlfnjUY=}
2014-07-02 18:11:18, Info CSI 000001f9 [SR] Cannot repair member file [l:20{10}]"WSDMon.dll" of Microsoft-Windows-Printing-WSDPortMonitor, Version = 6.1.7600.16385, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:18, Info CSI 000001fa [SR] This component was referenced by [l:198{99}]"Microsoft-Windows-Foundation-Package~31bf3856ad364e35~x86~~6.1.7601.17514.WindowsFoundationDelivery"
2014-07-02 18:11:18, Info CSI 000001fb Hashes for file member \??\C:\Windows\System32\WSDMon.dll do not match actual file [l:20{10}]"WSDMon.dll" :
Found: {l:32 b:ly8G+IKWb41NuSH3M9dm7RUEm4FITsZG/X0as34YW4E=} Expected: {l:32 b

G9He1FD/OYH/bCIrkcccDfiusAdjOjFe1zxvlfnjUY=}
2014-07-02 18:11:18, Info CSI 000001fc Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-p..ting-wsdportmonitor_31bf3856ad364e35_6.1.7600.16385_none_16a99a5140ecd6c8\WSDMon.dll do not match actual file [l:20{10}]"WSDMon.dll" :
Found: {l:32 b:ly8G+IKWb41NuSH3M9dm7RUEm4FITsZG/X0as34YW4E=} Expected: {l:32 b

G9He1FD/OYH/bCIrkcccDfiusAdjOjFe1zxvlfnjUY=}
2014-07-02 18:11:18, Info CSI 000001fd [SR] Could not reproject corrupted file [ml:520{260},l:46{23}]"\??\C:\Windows\System32"\[l:20{10}]"WSDMon.dll"; source file in store is also corrupted
2014-07-02 18:11:18, Info CSI 000001fe Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-msls31_31bf3856ad364e35_11.2.9600.16428_none_52384b40ff247e5b\msls31.dll do not match actual file [l:20{10}]"msls31.dll" :
Found: {l:32 b:j1SrPsS+eckrqd2pDfO5FXIslLCTiN3n0prkuzf0ttU=} Expected: {l:32 b:5uRFKC0Xzq/qtmpaHgEk3VDyQ4IFvOVknbmYva7QbLc=}
2014-07-02 18:11:18, Info CSI 000001ff [SR] Cannot repair member file [l:20{10}]"msls31.dll" of Microsoft-Windows-MSLS31, Version = 11.2.9600.16428, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:18, Info CSI 00000200 [SR] This component was referenced by [l:222{111}]"Microsoft-Windows-InternetExplorer-VistaPlus-Update~31bf3856ad364e35~x86~~11.2.9600.16428.Internet-Explorer-x86"
2014-07-02 18:11:18, Info CSI 00000201 Hashes for file member \??\C:\Windows\System32\msls31.dll do not match actual file [l:20{10}]"msls31.dll" :
Found: {l:32 b:j1SrPsS+eckrqd2pDfO5FXIslLCTiN3n0prkuzf0ttU=} Expected: {l:32 b:5uRFKC0Xzq/qtmpaHgEk3VDyQ4IFvOVknbmYva7QbLc=}
2014-07-02 18:11:18, Info CSI 00000202 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-msls31_31bf3856ad364e35_11.2.9600.16428_none_52384b40ff247e5b\msls31.dll do not match actual file [l:20{10}]"msls31.dll" :
Found: {l:32 b:j1SrPsS+eckrqd2pDfO5FXIslLCTiN3n0prkuzf0ttU=} Expected: {l:32 b:5uRFKC0Xzq/qtmpaHgEk3VDyQ4IFvOVknbmYva7QbLc=}
2014-07-02 18:11:18, Info CSI 00000203 [SR] Could not reproject corrupted file [ml:520{260},l:46{23}]"\??\C:\Windows\System32"\[l:20{10}]"msls31.dll"; source file in store is also corrupted
2014-07-02 18:11:18, Info CSI 00000204 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-audio-audiocore_31bf3856ad364e35_6.1.7601.17514_none_78a72e1242e1d8e5\audiodg.exe do not match actual file [l:22{11}]"audiodg.exe" :
Found: {l:32 b:TNlGNrVawp4xnkUisIcdg6pLNEFKfVHv2+AcsdmTZzk=} Expected: {l:32 b:dd41VECcQso7b8FQO8uMr/hdXXcD9+aMOKaaqO8/2oE=}
2014-07-02 18:11:18, Info CSI 00000205 [SR] Cannot repair member file [l:22{11}]"audiodg.exe" of Microsoft-Windows-Audio-AudioCore, Version = 6.1.7601.17514, pA = PROCESSOR_ARCHITECTURE_INTEL (0), Culture neutral, VersionScope = 1 nonSxS, PublicKeyToken = {l:8 b:31bf3856ad364e35}, Type neutral, TypeName neutral, PublicKey neutral in the store, hash mismatch
2014-07-02 18:11:18, Info CSI 00000206 [SR] This component was referenced by [l:198{99}]"Microsoft-Windows-Foundation-Package~31bf3856ad364e35~x86~~6.1.7601.17514.WindowsFoundationDelivery"
2014-07-02 18:11:18, Info CSI 00000207 Hashes for file member \??\C:\Windows\System32\audiodg.exe do not match actual file [l:22{11}]"audiodg.exe" :
Found: {l:32 b:TNlGNrVawp4xnkUisIcdg6pLNEFKfVHv2+AcsdmTZzk=} Expected: {l:32 b:dd41VECcQso7b8FQO8uMr/hdXXcD9+aMOKaaqO8/2oE=}
2014-07-02 18:11:18, Info CSI 00000208 Hashes for file member \SystemRoot\WinSxS\x86_microsoft-windows-audio-audiocore_31bf3856ad364e35_6.1.7601.17514_none_78a72e1242e1d8e5\audiodg.exe do not match actual file [l:22{11}]"audiodg.exe" :
Found: {l:32 b:TNlGNrVawp4xnkUisIcdg6pLNEFKfVHv2+AcsdmTZzk=} Expected: {l:32 b:dd41VECcQso7b8FQO8uMr/hdXXcD9+aMOKaaqO8/2oE=}
2014-07-02 18:11:18, Info CSI 00000209 [SR] Could not reproject corrupted file [ml:520{260},l:46{23}]"\??\C:\Windows\System32"\[l:22{11}]"audiodg.exe"; source file in store is also corrupted
2014-07-02 18:11:18, Info CSI 0000020a Repair results created:
POQ 90 starts: