I would...if I knew that it was the problem, but don't care to do so, unless I had reason to feel certain that this is the case. Originally, I intended for the drive to be dedicated to this purpose full time, but if I can't resolve the boot issue otherwise, I may pull the plug on it, and U3 would be a useful feature to retain.
---------- Post added at 12:28 PM ---------- Previous post was at 11:44 AM ----------
I found this article:
Disable Auto-Run and Auto-Play of U3 Smart Drives Launchpad My Digital Life
Which speaks about how to remove U3, but also tells how to simply disable it. The thing that caught my eye, is that it keeps referring to the flash drive as a CD/ROM. I did a couple of reboots, to see if using the Shift key during the boot would effect the boot time, but it seemed to act like a Pause key, except that it would start running again, after several seconds delay, and the panes still froze midflight as before, so that is not a solution.
Also, I noticed that the first page of the BIOS would sporadically hang on drive detection. This is something that previously has been caused by having flash drives plugged in. The only mention of the flash drive is on the last page of the BIOS run. I'm not sure what to call it, but in a much older rig that I had in the past, it was call the DMI Pool, or something of that sort. But the odd thing was that the drive was listed twice.
I went into the BIOS setup, and found the drive listed as an option within the CD/DVD listings, and tried moving it to first boot priority, but that didn't help. Something still isn't right, but I'm still not sure that it has to do with U3.